You can fill in the countersink holes using silicone if you want to make the bottom smoother and maybe gain some speed.
There should be a small volume of oil in the very bottom of the counterbalance shaft cavity, I would try to see if I can see it. Maybe you can suck the old oil out and replace it with new oil. Otherwise you don't know if it's empty or low until after the gear teeth are damaged. Manual says use 30wt motor oil but I used the same oil as the jet pump, gear oil, like the 951-DI specifies.
Just an idea of something to check, no special tools or sealer is required. The allen head screw has a metal (copper?) gasket under the head so be careful not to lose the gasket into the bilge. I reused the metal gasket.
Have fun and be safe!