Not to be contrary to the experts out here .... well, maybe I am.
Keeping in mind that I am a gross amateur in a steep learning curve on SeaDoos and having 5 to work on (danged job keeps getting in the way of fun stuff) ... some observations:
Regarding the "water police" not liking clear fuel lines, what is the meaning of the tag on the rear of the ski exempting the rig from USCG regulations on fuel system? Has anybody pointed this out to the "water police"? Maybe I am just a contrary old fart, but I have no problem looking the "officials" in the eye and challenging them to justify their position.
Regarding black fuel lines lasting forever ... most of the black fuel lines I have found in the skis I have are hard as a rock and cracked at many connections (leaking even without pressure in them). Anywhere you have even a small pressure differential you have the potential for leaks, I prefer to be able to see bubbles where they may cause a problem.
I am also a pilot with a great interest in experimental (homebuilt) aircraft; this, in fact, led me to the SeaDoo as a watercraft to learn about because of the commonality of the Rotax engine in both applications.
I acquired the clear fuel line I am putting in either the 89 or 90 SP to start with from an aircraft supply house. I figured if it was acceptable for fuel line in an airplane, it should be acceptable for use in a SeaDoo. I have a thread on this where I will update when I get back to the project.
Understanding that I am going in a direction not recommended by the experts and completely respecting their experiences, I will tread carefully, inspect frequently and post my experiences.
Rod's $0.03 worth