Before just blindly replacing parts, TEST them. Get the shop manual (free download) and follow the procedures.
Of course, clean up everything.
Aftermarket starters are JUNK, re-built OEMs are better (replacement brush kits are inexpensive and relatively easy to install).
It is a myth to cap the oil injection system and switch to pre-mix for longevity.....you'll just end up spending more on oil and you'll never get the mixing proportions consistently correct. The oil injection systems are pretty robust on the Seadoos....there is no logical point to going pre-mix.