I just want to close out this thread with the solution that I found causing the original issue that I posted about. Yes, I put the new carbs on and that solved it but I ended up using one of the old sets of carbs on one of my 97 XP skis. As I was going back through them and comparing stuff between them and the ones I was pulling off the ski, I noticed a shocking difference that I am still frustrated about. I originally rebuilt these carbs with an ebay parts kit (I know, I know). Once I experienced the issues all that crap was replaced with genuine Mikuni parts.... Except one thing... The freakin clear plastic check valves. I attempted to blow through the ebay ones and noticed a bit of a challenge to blow through it, then blew through the much more flimsy one on the other set of carbs and felt no restriction at all. I knew right then it was these tiny little pieces of plastic that caused all the issues from the very beginning. What wasted time!
So with that being said, this is the reason why you should ALWAYS use genuine Mikuni parts when rebuilding the carbs because something as simple to make as a piece of flat plastic can apparently be messed up.
And enut - still have to start the left engine first, it doesn't like it the other way.