With jet boats... engine RPMs can been significantly different to achieve a straight drive, since pump pressure is what dictates the "Push". AND... since a small sir leak... pump clearance... or impeller health can effect the pressure... monitoring engine RPM to "Synch" the system, would be almost pointless. With a prop boat... it's not as big of a factor.
Oh... and not to mention... there are several of our Seadoo boat models with different pitch impellers. (left to right)
So... once again... you have 2 throttle levers. Adjust them so you drive straight.