I think for emptying the fuel tank you can remove the fuel line from the connection at the fuel pump assembly on the engine or the tank outlet itself and extend that using some fuel hose over the gunwale to siphon the stale fuel out into a gas can on the ground? If the tank has a reserve shutoff valve place the valve in the "reserve" position and also position the boat so fuel runs toward the location of the fuel tank pickup (usually lift the bow a bit).
That is, I'm pretty sure it's a standard fuel pickup in the tank, electric fuel pump is installed on the motor in your case. If there's an electric fuel pump in the tank usually you can power it with jumper wires to pump the fuel out.
Of course I prefer using an electric fuel pump with a filter b/c that moves the fuel faster than siphoning, a cheap filter keeps e-pump from getting fouled. Also watch and don't let your gas can overfill onto the ground.
If it's badly skunky fuel that can't be burned in the lawnmower, maybe the local auto salvage yard will let you put it in their hazmat tank?
Concerning the cylinder compression check, you can skip that test if you want but I feel it's an important diagnostic to get a quick idea of engine condition and monitor condition over time, as the engine wears the compression tends to drop off so it's like keeping track of fuel mileage performance.
Anyway, if you're interested in purchasing a cylinder compression gauge, your local Harbor Freight tool store has the gauge with hose that screws into the spark plug hole and quick-connect fitting to attach the gauge, as well as most every autoparts store, you want the type that has a hose to connect the gauge.
The gauges come complete with instructions, so follow those basically. Remove all spark plugs before beginning, set the throttle to full open and preferably disable the ignition system by grounding all the plug wires with jumper wires to avoid damaging the ignition coils or making sparks that can ignite fuel vapors. Crank the engine just as if you were going to start it, using the electric starter, for a few seconds until the gauge needle stops rising. Record each cylinder as you go, they should all be within about 10% of each other or preferably closer within 5psi or so would be great. Record the results, I usually write the pressure on the cylinder head next to the plug using a permanent marker (difficult on black paint though, LOL).
I think to crank your engine with full throttle you must use the bypass mode of the throttle controller, pull out or push the button, this leaves the reverse gate of the jet pump in the neutral position while allowing you to apply throttle. Otherwise, the safety interlocks will prevent you from cranking the engine.
The reason for positioning the throttle to full open is to move the intake butterfly valves to a position that allows air into the cylinders while cranking, and full open will tell the engine computer to shut off the fuel injectors (WOT while cranking = fuel-flooded clearing mode, this disables fuel injectors).