It's o.k. to use the battery pack....
I don't know how you fried the mpem with a jumper pack, because that's not why MPEM's get fried.
Even in the manual, it gives the procedure for jumping the Rotax engine.
The users who have experienced the mis-fortune of blowing their mpem while jump starting, did so because the vehicle they were starting from, was left running. By doing this, your allowing the alternator, generator, or magneto from that other vehicle, to supply your electrical system with 14 volts DC power. Under normal starting conditions, your electrical system is only using 12 vdc.
So, if it becomes necessary to jump start your PWC/boat from another source, then I recommend you keep a jumper pack handy, or make sure, the battery your jumping from is NOT running. To eliminate the use of either..........get off your cheap butt and buy a new battery. And if your running the battery down while trying to crank, remember, if it doesn't hit in 30 seconds of turning the engine over, something is wrong.......find the root cause.