Ok,, from what I can see by enlarging the picture and zooming in as best I could, it looks to me that the flywheel hit something while spinning. I say this as it looks to be pulled from it's mounting area and yu see metal that is clearly crushed and moved. I do not think you could have done that with the puller. There is a chance you could have broken it from the mounting, but very unlikely you caused the hitting or marring.
All that said, it is probably trashed as there really is no way to remount that part without welding or somethige like that for example. And the moment you do that, you will lose the balance.
Lets let others that have specific knowledge jump in, but I feel pretty confident based on your pictures...