Update: It was DEFINITELY misaligned. The alignment tool was off by 1/8" from even going into the PTO with the previous setup
I bought the SBT alignment tool, removed all left and right side shims, and the engine was quite far off to the right and below the shaft
To even get it to be mostly aligned, I needed THIS stack of shims on the right side with all left shims removed.
It's still off by a little... Adding shims to the right side keeps moving the engine left and up. but if I add more shims the engine is getting too high, even though it's still slightly to the right of the driveshaft.
It's really close, but I hear a little clink as the rod goes in the PTO, and it doesn't slide easily out when I push the whole rod in.
1) How critical is it that the alignment be perfect? It's already massively better than before.
2) Is something wrong with my sea doo or engine? I've never heard of needing this many shims
3) The bolts that secure the mount to the hull aren't long enough given the number of shims I needed. Are there longer standard bolts?
4) Is there something I should be doing differently?