OK first thing disregard RAVE valve comments as they only apply when throttle is 70% or greater. A rave valve not rising reduces the top RPM of the engine but does not hamper low end as you are describing especially out of water.
Since you have a DI, this add two component which need to be checked. The first is fuel pump pressure. However, this is not as easy as a vehicle as a DI has two pressures. 25 Psi at idle and 118 to 120 at full throttle. In order to test the fuel rail, you will need to either make or buy a test rig. I chose to buy it as did not want to waste time with finding the correct fittings. Here is my suggestion (I make NOTHING on this suggestion. I have just used this product and it worked.):
fuel pressure test rig
Once you are able to verify that fuel pressure at idle and at full throttle is up to spec. The next thing to check is the air compressor. I suggest the following rig as well. FYI, Air compressor rig:
DI air pressure Tee fitting. Please watch this on how to use:
. This video will allow you to monitor and inject air into the fuel rail. If this air compressor is worn OR there are leaks, this can lead to lower air pressure and result in your behavior. In my experience, the only other situation would be a failure or leakage of air from the Air Injector 275500512. The carbon ring on the air injectors can start to leak air and result in lower air injection but this is long shot.
The final rare situation is the fuel injectors. However in my opinion, these either work or do not. So, this is worst case and last explanation, as such I would rather spend time looking at fuel pressure or air pressure leaks. NOTE: air pressure leaks from RAVE Valves if sever enough could cause this issue. however, I would have expected you to say something about loud air noises. But for clarifications, please verify with soap and water all of the air hoses. See:
Sea-Doo 2001 GTX DI 5529 OEM Parts Diagram for Air Intake System | Partzilla.com
With all this said, I would start first at the fuel pump, verify fuel pressure, and then move to air.
Later.