Siphon tubes......
In this case, where you take on water while riding but when stopped, can't see any water coming in, it's usually the bailer tubes. This system is set up to work on the low pressure created in the siphon tubes in the rear of the pump. If the sipon tubes come off or break, then water pressure created in the nozzle can actually flow into the compartment through the bailer tubes.
Now, if you've got water coming in through the bailers at idle, this usually means that the tie straps holding the hoses above water level have broken, etc.....allowing water to flow back in when you come off plane.
Don't dismiss the cooling system water leaks either. Use a mirror to look under your exaust and manifold with a flashlight to see if you see any water stains...............:cheers: